1996
Couch, L., P.A. Stone, D.W. Duszynski, H.L. Snell, & H.M. Snell. A survey of the coccidian parasites of reptiles from islands of the Galàpagos Archipelago: 1990-1994. Journal of Parasitology 82:432-437.
Wilber, P.G., E.C. Hellgren & T.M. Gabor. Coccidia of the collared peccary (Tayassu tajacu) in southern Texas with descriptions of three new species of Eimeria (Apicomplexa: Eimeriidae). Journal of Parasitology 82: 624-629.
1997
Duszynski, D.W. Coccidia from bats (Chiroptera) of the world: A new Eimeria species in Pipistrellus javanicus from Japan. Journal of Parasitology 83:280-282.
Duszynski, D.W. & P.G. Wilber. A guideline for the preparation of species descriptions in the Eimeriidae. Invited Critical Comment. Journal of Parasitology 83:333-336.
Fuller, C.A. & D.W. Duszynski. Eimeria (Protozoa: Eimeriidae) from North American sciurids, Glaucomys sabrinus and Tamias townsendii: with a description of a new species. Journal of Parasitology 83:467-470.
Scott, D.T. & D.W. Duszynski. Eimeria from bats of the world: Two new species from Myotis spp. (Chiroptera: Vespertilionidae). Journal of Parasitology 83:495-501.
1998
Duszynski, D.W., S. Upton & L. Couch. The Coccidia of the World: a unified database. Proceedings of the IX International Congress of Parasitology, Monduzzi Editore SpA. Bologna, Italy. pp. 1067-1071
Hnida, J.A., W.D. Wilson & D.W. Duszynski. A new Eimeria species (Apicomplexa: Eimeriidae) infecting Onychomys species (Rodentia: Muridae) in New Mexico and Arizona. Journal of Parasitology 84:1207-1209.
Wilber. P.G., D.W. Duszynski, S.J. Upton, R.S. Seville and J.O. Corliss. A revision of the taxonomy and nomenclature of the Eimeria spp. (Apicomplexa: Eimeriidae) from rodents in the Tribe Marmotini. Systematic Parasitology 39: 113-135.
1999
Duszynski, D.W. Eimeria In: Embryonic Encyclopedia of Life Sciences. Nature Publishing Group, London. http://www.els.net
Duszynski, D.W. Revisiting the Code: Clarifying name-bearing types for photomicrographs of protozoa. Journal of Parasitology. 85: 769-770.
Duszynski, D.W., D.T. Scott, J. Aragon, A. Leach & T. Perry. Six new Eimeria species from Vespertilionid bats of North America. Journal of Parasitology 85: 496-503.
Duszynski, D.W., D.T. Scott & X. Zhao. Eimeria from bats of Bolivia: Two new species from Vespertilionid bats. Journal of Parasitology 85: 504-507.
Duszynski, D.W., W.D. Wilson, S.J. Upton & N.D. Levine. Coccidia (Apicomplexa: Eimeriidae) in the Primates and Scandentia. International Journal of Primatology. 20: 761-797.
Heckscher, S.K., B.A. Wickesberg, D.W. Duszynski & S.L. Gardner. Three new species of Eimeria from Bolivian marsupials. International Journal of Parasitology 29: 275-284.
Hnida, J.A. and D.W. Duszynski. Taxonomy and systematics of some Eimeria species of murid rodents as determined by the ITS1 region of the ribosomal gene complex. Parasitology 119: 349-357.
Hnida, J.A. & D.W. Duszynski. Taxonomy and phylogeny of some Eimeria species of rodents as determined by PCR-RFLP analysis of 18S rDNA. Parasitology Research. 85: 887-894.
Hnida, J.A. & D.W. Duszynski. Cross-transmission studies with Eimeria arizonensis, E. arizonensis-like oocysts and E. langebarteli: Host specificity of the genus and species level within the Muridae and other rodents. Journal of Parasitology 85: 873-877.
Lindsay, D.S., S.J. Upton, and M.B. Hildreth. Descriptions of two new species of coccidia (Protozoa: Eimeriidae) and redescriptions of Eimeria ivensae and Eimeria odocoilei from captive white-tailed deer, Odocoileus virginianus. Journal of Parasitolology 85: 1120-1126.
Lindsay, D.S., S.J. Upton & J.P. Dubey. A structural study of the Neospora caninum oocyst. International Journal of Parasitology. 29: 1521-1523.
2000
Asmundsson, I.M., J.A. Campbell, and D.W. Dusznski. A new Eimeria sp. from the plumbeous Central American Caecilian, Dermophis mexicanus (Amphibia: Gymnophiona) from Volcan Tajumulco, Department of San Marcos, Guatemala. Journal of Parasitology 86: 340-342.
Duszynski, D.W. & S. J. Upton. Coccidia (Apicomplexa: Eimeriidae) of the Mammalian Order Insectivora. Special Publication of the Museum of Southwestern Biology No. 4, University of New Mexico Press, Albuquerque, NM. 67 pp.
Lindsay, D.S., S.J. Upton, D.S. Owens, U.M. Morgan, J.R. Mead, and B.L. Blagburn. Cryptosporidium andersoni n. sp. (Apicomplexa: Cryptosporidiidae) from cattle, Bos taurus. Journal of Eukaryotic Microbiology. 47(1): 91-95.
Upton, S.J., M.A. Stamper, A.L. Osborn, S.L. Mumford, L. Zwick, M.J. Kinsel, and R.M. Overstreet. A new species of Eimeria (Apicomplex, Eimeriidae) from the weedy sea dragon, Phyllopteryx taeniolatus (Osteichthyes: Syngnathidae). Diseases of Aquatic Organisms. 43: 55-59.
Upton, S.J. and B. Whitaker. New species of Isospora (Apicomplexa, Eimeriidae) from the troupial and white-edged oriole (Icterus)spp.(Aves, Passeriformes, Icteridae). Acta Protozoloogica. 45: 67-70.
2001
Asmundsson, I.M., S.J. Upton, and P.S. Freed. Five new species of coccidia (Apicomplexa: Eimeriidae) from colubrid snakes of Ecuador. Journal of Parasitology. 87: 1077-1081.
Couch, L., G.W. Foster, M. Machicote and L.C. Branch, 2000. Descriptions of two new species of Eimeria (Apicomplexa: Eimeriidae) and of E. chinchillae-like oocysts from the plains vizcacha Lagostomus maximus (Desmarest, 1817) (Rodentia: Chinchillidae) from Argentina. Journal of Parasitology. In press.
Duszynski, D.W. and S.J. Upton. Enteric protozoans: Cyclospora, Eimeria, Isospora and Cryptosporidium (Cryptosporidiidae) spp. Chapter 16, pp. 416-459,In, Parasitic Diseases of Wild Mammals, 2nd ed. (W.M. Samuel, M.J. Pybus, A.A. Kocan, eds.) Iowa State University Press, Ames, IA. pp. 416-459.
McAllister, C.T., S.J. Upton, S.E. Trauth, and D.W. Allard. A redescription of Eimeria macyi (Apicomplexa: Eimeriidae) from the eastern pipistrelle, Pipistrellus subflavus (Mammalia: Chiroptera), from Arkansas. Journal of the Arkansas Academy of Science. 55: 181-183.
Upton, S.J., S.C. Wilson, T.M. Norton, and E.C. Greiner. A new species of Isospora Schneider, 1881 (Apicomplexa: Eimeriidae) from the Bali (Rothchild's) mynah, Leucopsar rothschildi (Passeriformes: Sturnidae), and comments concerning the genera Atoxoplasma Garnham, 1950 and Isospora. Systematic Parasitology. 48: 47-53.
Zhao, X. and D.W. Duszynski. Molecular phylogenies suggest the oocsyt residuum can be used to distinguish two independent lineages of Eimeria spp. in rodents. Parasitology Research. 87: 638-643.
Zhao, X. and D.W. Duszynski. Phylogenetic relationships among rodent Eimeria species determined by plastid ORF470 and nuclear 18S rDNA sequences. International Journal for Parasitology. 31: 715-719.
Zhao, X., D.W. Duszynski and E.S. Loker. A simple method of DNA extraction for Eimeria species. Journal of Microbiological Methods. 44: 131-137.
Zhao, X., D.W. Duszynski and E.S. Loker. Phylogenetic position of Eimeria antrozoi, a bat coccidium (Apicomplexa: Eimeriidae) and its relationship to morphologically similar Eimeria spp. from bats and rodents based on nuclear 18S and plastid 23S rDNA sequences. Journal of Parasitology. 87 (5): 1120-1123.
2002
D.W. Duszynski. Coccidia (Apicomplexa: Eimeriidae) of the Mammalian Order Chiroptera. Special Publication: The Museum of Southwestern Biology. 5: 1-45.
Perkins, F.O., J.R. Barta, R.E. Clopton, M.A. Peirce, and S.J. Upton. Phylum Apicomplexa Levine, 1970. In: An Illustrated Guide to the Protozoa, 2nd. ed. (J.J. Lee, ed.). Allen Press, Lawrence, KS. pp. 190-200.
Upton, S.J. Comment on the proposed designation of Isospora suis Biester, 1934 as the type species of Isospora Schneider, 1881 (Protista, Apicomplexa). Bulletin of Zoological Nomenclature. 59(2): 125-128.
Upton, S.J. Suborder Eimeriorina Leger, 1911. In: An Illustrated Guide to the Protozoa, 2nd. ed. (J.J. Lee, ed.). Allen Press, Lawrence, KS. pp. 318-339.
2003
Couch, L., S. Uni and D.W. Duszynski. Eimeria species from serows (Capricornis spp.) in Japan with descriptions of two new species. Journal of Parasitology. 89 (3): 580-584.
Duszynski, D.W. and W.C. Marquardt. Coccidia in the mammary glands of shrews (Order: Insectivora). Journal of Parasitology. 89: 609-611.
Duszynski, D.W., R. P. Eckerlin and T.J. McCarthy. Eimeria species from Cryptotis shrews (Insectivora: Soricidae) with description of a new species. Journal of Parasitology 89: 974-977.
2004
McAllister, C.T., Upton, S.J., and Bursey, C.R. Parasites (Coccidia, Trematoda, Nematoda) from select bats of Arkansas. Journal of the Arkansas Academy of Sciences. 58: 133-136.
2005: Manuscripts in preparation.
Couch, L. and D.W. Duszynski. Coccidia (Apicomplexa: Eimeriidae) from rabbits (Lagomorpha). In preparation (>150 ms pp.).
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